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<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"><title>AlCoB 2016: call for participation</title></head><body>********************************************************************<br><br>
3rd INTERNATIONAL CONFERENCE ON ALGORITHMS FOR COMPUTATIONAL BIOLOGY<br><br>
AlCoB 2016<br><br>
Trujillo, Spain<br><br>
June 21-22, 2016<br><br>
Organized by:<br><br>
Computer Architecture and Logic Design Group (ARCO)<br>
University of Extremadura<br><br>
Extremadura Centre for Advanced Technologies (CETA-CIEMAT)<br><br>
and<br><br>
Research Group on Mathematical Linguistics (GRLMC)<br>
Rovira i Virgili University<br><br>
http://grammars.grlmc.com/AlCoB2016/<br><br>
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PROGRAM<br><br><br>
Tuesday, June 21<br><br><br>
09:00 - 09:30 Registration<br><br>
09:30 - 09:40 Opening<br><br>
09:40 - 10:30 S. Cenk Sahinalp: Big Data Algorithmics for Cancer Genomics - Invited Lecture<br><br>
10:30 - 11:00 Coffee Break<br><br>
11:00 - 12:15<br><br>
Daniel Figueiredo: Relating Bisimulations with Attractors in Boolean Network Models<br><br>
Tibor Kmet, Maria Kmetova: Neural Network Simulation of Feeding Adaptations of Daphnia<br><br>
Charmi Panchal, Sepinoud Azimi, Ion Petre: Generating the Logicome of a Biological Network<br><br>
12:15 - 12:30 Break<br><br>
12:30 - 13:20<br><br>
Cedric Chauve, Julien Courtiel, Yann Ponty: Counting, Generating and Sampling Tree Alignments<br><br>
Esteban López-Camacho, María Jesús García Godoy, José García-Nieto, Antonio J. Nebro, José F. Aldana Montes: A New Multi-objective Approach for Molecular Docking Based on RMSD and Binding Energy<br><br>
13:20 - 15:20 Lunch<br><br>
15:20 - 16:10<br><br>
Saad Mneimneh, Syed Ali Ahmed: Gibbs/MCMC Sampling for Multiple RNA Interaction with Sub-optimal Solutions<br><br>
Sourya Bhattacharyya, Jayanta Mukhopadhyay: Accumulated Coalescence Rank and Excess Gene Count for Species Tree Inference<br><br>
16:10 - 16:25 Break and Group Photo<br><br>
16:25 - 17:15 Evan Eichler: De Novo Genome Assembly and Structural Variation - Invited Lecture<br><br>
17:15 - 17:30 Break<br><br>
17:30 - Poster presentations<br><br><br>
Wednesday, June 22<br><br><br>
09:00 - 09:50 David Sankoff: The Trees in the Peaks - Invited Lecture<br><br>
09:50 - 10:20 Coffee Break<br><br>
10:20 - 11:35<br><br>
Agnieszka Mykowiecka, Pawel Górecki: Bootstrapping Algorithms for Gene Duplication and Speciation Events<br><br>
Laura Urbini, Blerina Sinaimeri, Catherine Matias, Marie-France Sagot: Robustness of the Parsimonious Reconciliation Method in Cophylogeny<br><br>
Carlo Comin, Anthony Labarre, Romeo Rizzi, Stéphane Vialette: Sorting with Forbidden Intermediates<br><br>
11:35 - 11:50 Break<br><br>
11:50 - 13:05<br><br>
Simone Faro: Evaluation and Improvement of Fast Algorithms for Exact Matching on Genome Sequences<br><br>
Mikko Rautiainen, Leena Salmela, Veli Mäkinen: Identification of Variant Compositions in Related Strains without Reference<br><br>
Sergey P. Tsarev, Michael G. Sadovsky: New Error Tolerant Method for Search of Long Repeats in DNA Sequences<br><br>
13:05 - 13:15 Closing<br><br>
13:15 - Lunch</body></html>